SNP Report
Basic Infomation
| Name | rs840975 dbSNP |
|---|---|
| Location | chr:2,65706955 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10190233 | 0.81[CHB][hapmap] |
| rs11694714 | 0.86[CHB][hapmap] |
| rs1344891 | 0.90[CHB][hapmap] |
| rs1370394 | 0.90[CHB][hapmap] |
| rs1437461 | 0.91[CHB][hapmap] |
| rs2860779 | 0.95[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs6755006 | 0.86[CHB][hapmap] |
| rs6755128 | 0.86[CHB][hapmap] |
| rs7562559 | 0.91[CHB][hapmap] |
| rs840967 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs840969 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs840971 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs840972 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs865768 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs963539 | 0.81[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000204929 | Distal transcriptional regulation |
| ENSG00000204929 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014