SNP Report
Basic Infomation
| Name | rs840967 dbSNP |
|---|---|
| Location | chr:2,65701757 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10190233 | 0.81[CHB][hapmap] |
| rs11694714 | 0.86[CHB][hapmap] |
| rs1344891 | 0.90[CHB][hapmap] |
| rs1370394 | 0.90[CHB][hapmap] |
| rs1437461 | 0.90[CHB][hapmap] |
| rs2860779 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6755006 | 0.86[CHB][hapmap] |
| rs6755128 | 0.86[CHB][hapmap] |
| rs7562559 | 0.90[CHB][hapmap] |
| rs840969 | 1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs840971 | 0.80[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs840972 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs840975 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs865768 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs963539 | 0.80[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000204929 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SLC1A4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014