SNP Report

Basic Infomation

Name	rs833823 dbSNP
Location	chr:12,49349856
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11168810	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11610308	1.00[CHB][hapmap]
rs11833860	1.00[CHB][hapmap]
rs12122	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318558	1.00[CHB][hapmap]
rs12424638	1.00[CHB][hapmap]
rs12829682	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1690183	0.83[AMR][1000 genomes]
rs2694841	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3741624	1.00[CHB][hapmap]
rs41291977	0.86[EUR][1000 genomes]
rs708242	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71464944	1.00[EUR][1000 genomes]
rs7305811	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7967350	0.90[AFR][1000 genomes]
rs7981004	0.81[ASW][hapmap]
rs833825	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs833829	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs833830	0.81[ASW][hapmap]
rs833834	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs833835	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs863855	0.81[ASW][hapmap]
rs941193	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000238395	Distal transcriptional regulation
PRKAG1	Distal transcriptional regulation
ENSG00000257913	Distal transcriptional regulation
DDN	Distal transcriptional regulation
TUBA1B	Distal transcriptional regulation
ENSG00000258017	Distal transcriptional regulation
DDX23	Distal transcriptional regulation
RND1	Distal transcriptional regulation
FKBP11	Distal transcriptional regulation
WNT10B	Distal transcriptional regulation
CACNB3	Distal transcriptional regulation
ENSG00000255863	Distal transcriptional regulation
ARF3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)