SNP Report
Basic Infomation
| Name | rs833835 dbSNP |
|---|---|
| Location | chr:12,49361150 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168810 | 0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12122 | 1.00[EUR][1000 genomes] |
| rs12829682 | 0.86[EUR][1000 genomes] |
| rs2694841 | 1.00[EUR][1000 genomes] |
| rs41291977 | 0.86[EUR][1000 genomes] |
| rs708242 | 0.91[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs71464944 | 1.00[EUR][1000 genomes] |
| rs7305811 | 0.83[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7967350 | 0.89[AFR][1000 genomes] |
| rs833823 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs833825 | 0.82[AFR][1000 genomes] |
| rs833829 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs833834 | 0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs941193 | 0.88[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARF3 | Distal transcriptional regulation |
| WNT1 | Distal transcriptional regulation |
| WNT10B | Distal transcriptional regulation |
| WNT10B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014