SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12441598	0.81[AFR][1000 genomes]
rs1564278	0.92[YRI][hapmap]
rs2127162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784713	0.92[YRI][hapmap]
rs3784716	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs4776988	0.90[YRI][hapmap]
rs4776989	0.90[YRI][hapmap]
rs7171219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7183168	0.90[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
SMAD3	Distal transcriptional regulation
MAP2K5	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)