SNP Report
Basic Infomation
| Name | rs7171219 dbSNP |
|---|---|
| Location | chr:15,68113771 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12441598 | 0.82[AFR][1000 genomes] |
| rs1478941 | 0.83[AFR][1000 genomes] |
| rs1564278 | 0.86[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs2127162 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3784713 | 0.86[YRI][hapmap] |
| rs3784716 | 0.94[ASW][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs4386088 | 0.86[AFR][1000 genomes] |
| rs4508380 | 0.86[AFR][1000 genomes] |
| rs4776988 | 0.94[ASW][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs4776989 | 0.94[ASW][hapmap];0.95[YRI][hapmap] |
| rs7183168 | 0.87[ASW][hapmap];0.95[YRI][hapmap] |
| rs8025526 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SKOR1 | Proximal transcriptional regulation |
| SKOR1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014