SNP Report
Basic Infomation
| Name | rs7850 dbSNP |
|---|---|
| Location | chr:2,65249922 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10197339 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10209552 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[MEX][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1058922 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1058926 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17029736 | 1.00[ASN][1000 genomes] |
| rs17029771 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2540955 | 0.90[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2540956 | 0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2540966 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2540967 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2540969 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2723071 | 0.90[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs2723074 | 0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2723076 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2723078 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62140372 | 1.00[ASN][1000 genomes] |
| rs62140373 | 0.92[EUR][1000 genomes] |
| rs72886524 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7563131 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7586345 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs759458 | 0.83[LWK][hapmap];0.86[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC1A4 | Proximal transcriptional regulation |
| SLC1A4 | Distal transcriptional regulation |
| SLC1A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014