SNP Report
Basic Infomation
| Name | rs2540956 dbSNP |
|---|---|
| Location | chr:2,65268944 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10197339 | 1.00[ASN][1000 genomes] |
| rs10209552 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1058922 | 0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1058926 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17029736 | 1.00[ASN][1000 genomes] |
| rs17029771 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2540952 | 0.95[EUR][1000 genomes] |
| rs2540955 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2540966 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2540967 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2540969 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2723071 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2723074 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2723076 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2723078 | 0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62140372 | 1.00[ASN][1000 genomes] |
| rs72886524 | 0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7563131 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7586345 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7850 | 0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000232613 | Proximal transcriptional regulation |
| CEP68 | Distal transcriptional regulation |
| RAB1A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014