SNP Report
Basic Infomation
| Name | rs7608697 dbSNP |
|---|---|
| Location | chr:2,61204641 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10182512 | 0.83[EUR][1000 genomes] |
| rs10188217 | 0.87[ASN][1000 genomes] |
| rs10191548 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10195112 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10207958 | 0.87[ASN][1000 genomes] |
| rs13003464 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1962449 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4560096 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55776317 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6754585 | 0.87[ASN][1000 genomes] |
| rs67927699 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7596362 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7608910 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9309332 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000232713 | Distal transcriptional regulation |
| PUS10 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014