SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 18)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10181042	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes]
rs10182774	1.00[CHB][hapmap]
rs10188217	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191951	1.00[CHB][hapmap]
rs10195800	1.00[CHB][hapmap]
rs10207958	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10211029	1.00[CHB][hapmap]
rs13003464	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs4560096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4643526	1.00[CHB][hapmap]
rs6710043	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6754585	1.00[ASN][1000 genomes]
rs7562347	1.00[CHB][hapmap]
rs7585642	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7589039	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7596362	0.87[ASN][1000 genomes]
rs7608697	0.87[ASN][1000 genomes]
rs7608910	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RNA5SP95	Distal transcriptional regulation
PUS10	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 4)