SNP Report
Basic Infomation
| Name | rs1962449 dbSNP |
|---|---|
| Location | chr:2,61202549 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10181042 | 0.92[ASN][1000 genomes] |
| rs10182512 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10191548 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10191951 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10195112 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13003464 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4560096 | 0.93[EUR][1000 genomes] |
| rs55776317 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6710043 | 0.92[ASN][1000 genomes] |
| rs67927699 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7562347 | 1.00[ASN][1000 genomes] |
| rs7585642 | 0.85[ASN][1000 genomes] |
| rs7589039 | 0.92[ASN][1000 genomes] |
| rs7596362 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7608697 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7608910 | 0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PUS10 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014