SNP Report
Basic Infomation
| Name | rs7523335 dbSNP |
|---|---|
| Location | chr:1,8180210 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12711516 | 0.98[ASN][1000 genomes] |
| rs225106 | 0.90[CHB][hapmap] |
| rs225110 | 0.90[CHB][hapmap] |
| rs225129 | 0.90[CHB][hapmap] |
| rs28624 | 0.85[CHB][hapmap] |
| rs400736 | 0.90[CHB][hapmap] |
| rs408320 | 0.85[CHB][hapmap] |
| rs442862 | 0.85[CHB][hapmap] |
| rs4908724 | 0.86[TSI][hapmap] |
| rs4908727 | 0.94[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6577468 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6694154 | 0.86[ASN][1000 genomes] |
| rs7523227 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7539807 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7540528 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7550111 | 0.98[ASN][1000 genomes] |
| rs7551900 | 0.98[ASN][1000 genomes] |
| rs9434991 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9434992 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9434993 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9651154 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERRFI1 | Distal transcriptional regulation |
| ENSG00000238290 | Distal transcriptional regulation |
| ENSG00000229305 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| PARK7 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014