SNP Report
Basic Infomation
| Name | rs73124781 dbSNP |
|---|---|
| Location | chr:20,44481383 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13037894 | 0.90[AFR][1000 genomes];0.80[ASN][1000 genomes] |
| rs16990589 | 0.83[AMR][1000 genomes] |
| rs3746500 | 0.89[ASN][1000 genomes] |
| rs4458269 | 0.83[AMR][1000 genomes] |
| rs45486998 | 0.83[AMR][1000 genomes] |
| rs56261048 | 0.83[AMR][1000 genomes] |
| rs61053751 | 0.89[ASN][1000 genomes] |
| rs7270170 | 0.85[ASN][1000 genomes] |
| rs7271230 | 0.83[AMR][1000 genomes] |
| rs73116850 | 0.83[AMR][1000 genomes] |
| rs73124737 | 0.83[AMR][1000 genomes] |
| rs73124738 | 0.83[AMR][1000 genomes] |
| rs73124741 | 0.83[AMR][1000 genomes] |
| rs73124742 | 0.83[AMR][1000 genomes] |
| rs73911122 | 0.89[ASN][1000 genomes] |
| rs73911123 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACOT8 | Proximal transcriptional regulation |
| ZSWIM3 | Proximal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| ACOT8 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014