SNP Report
Basic Infomation
| Name | rs7271230 dbSNP |
|---|---|
| Location | chr:20,44447118 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs16990589 | 1.00[AMR][1000 genomes] |
| rs16990631 | 0.83[AMR][1000 genomes] |
| rs16990776 | 0.83[AMR][1000 genomes] |
| rs41282762 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs41282768 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4458269 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs45486998 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs45549239 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs55794417 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs56261048 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs59370923 | 0.81[EUR][1000 genomes] |
| rs67571923 | 0.80[EUR][1000 genomes] |
| rs7260934 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73114833 | 0.91[AMR][1000 genomes] |
| rs73116850 | 1.00[AMR][1000 genomes] |
| rs73120855 | 0.83[AMR][1000 genomes] |
| rs73122716 | 0.83[AMR][1000 genomes] |
| rs73122729 | 0.83[AMR][1000 genomes] |
| rs73122731 | 0.83[AMR][1000 genomes] |
| rs73122735 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73122739 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73122754 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73122763 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73122768 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs73124737 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73124738 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73124741 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73124742 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73124762 | 0.81[EUR][1000 genomes] |
| rs73124781 | 0.83[AMR][1000 genomes] |
| rs8118462 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PCIF1 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014