SNP Report
Basic Infomation
| Name | rs730075 dbSNP |
|---|---|
| Location | chr:10,94050461 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509643 | 0.86[YRI][hapmap] |
| rs10786036 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10882029 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10882034 | 0.87[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs10882035 | 0.82[ASN][1000 genomes] |
| rs10882036 | 0.82[ASN][1000 genomes] |
| rs10882039 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10882043 | 0.85[ASN][1000 genomes] |
| rs11186848 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs11186851 | 0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[ASN][1000 genomes] |
| rs11186862 | 0.82[ASN][1000 genomes] |
| rs11186869 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11186872 | 0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12246924 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12256461 | 0.91[AMR][1000 genomes] |
| rs12267769 | 0.82[LWK][hapmap];0.86[YRI][hapmap] |
| rs12412346 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs3740302 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4933721 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs56072007 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57381242 | 0.82[ASN][1000 genomes] |
| rs66521023 | 0.81[ASN][1000 genomes] |
| rs66882667 | 0.90[ASN][1000 genomes] |
| rs7073372 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7080101 | 0.89[ASN][1000 genomes] |
| rs7085368 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7098170 | 0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes] |
| rs7917088 | 0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs932820 | 0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs9804247 | 0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MARCH5 | Proximal transcriptional regulation |
| MFSD12 | Distal transcriptional regulation |
| MAK16 | Distal transcriptional regulation |
| TAF1 | Distal transcriptional regulation |
| NHP2P1 | Distal transcriptional regulation |
| CPEB3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014