SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10509643	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882029	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs10882039	0.80[LWK][hapmap];0.86[YRI][hapmap]
rs10882048	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[YRI][hapmap]
rs12221454	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12258269	0.84[LWK][hapmap];0.80[YRI][hapmap]
rs12262492	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2182647	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs730075	0.82[LWK][hapmap];0.86[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
CPEB3	Distal transcriptional regulation
MARCH5	Distal transcriptional regulation
CPEB3	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)