SNP Report

Basic Infomation

Name	rs7173826 dbSNP
Location	chr:15,67528374
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 139)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10152913	0.82[YRI][hapmap]
rs10152973	0.84[ASW][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs10438290	0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10438355	1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs10518716	0.84[ASW][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs10851773	0.90[ASN][1000 genomes]
rs11071940	0.81[AMR][1000 genomes]
rs11071942	0.83[AFR][1000 genomes]
rs11071943	0.80[CHB][hapmap];0.84[CHD][hapmap]
rs11071944	0.92[ASN][1000 genomes]
rs11071947	0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs11632754	0.82[JPT][hapmap]
rs11636197	0.85[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs12148121	0.80[AMR][1000 genomes]
rs12148134	0.81[AMR][1000 genomes]
rs12324222	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12438251	0.80[CHB][hapmap];0.84[CHD][hapmap]
rs12440869	0.80[CHB][hapmap];0.84[CHD][hapmap]
rs12443279	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12443472	0.88[MEX][hapmap]
rs12476	0.84[ASW][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12591495	0.83[AFR][1000 genomes]
rs12592400	0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs12594065	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12594229	0.82[AMR][1000 genomes]
rs12594234	0.82[AMR][1000 genomes]
rs12594477	0.85[ASN][1000 genomes]
rs12595334	0.84[ASW][hapmap];0.83[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.80[AMR][1000 genomes]
rs12595736	0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12898685	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12899051	0.81[AMR][1000 genomes]
rs12899067	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12900708	0.82[AMR][1000 genomes]
rs12901312	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12901789	0.80[AMR][1000 genomes]
rs12910062	0.88[MEX][hapmap];0.85[MKK][hapmap];0.80[AMR][1000 genomes]
rs12910196	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12911370	0.84[ASW][hapmap];0.88[MEX][hapmap];1.00[YRI][hapmap]
rs12916403	0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12917612	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1444935	0.80[AMR][1000 genomes]
rs1444936	0.84[ASW][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs15974	0.80[CHB][hapmap]
rs16950776	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16950804	0.84[ASW][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16950805	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16953610	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17526859	0.84[ASW][hapmap];0.83[LWK][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap];0.80[AMR][1000 genomes]
rs1992217	0.83[ASN][1000 genomes]
rs2033783	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2044329	0.85[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2120837	0.97[ASN][1000 genomes]
rs2278670	0.80[AMR][1000 genomes]
rs2289262	0.84[ASW][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2289789	1.00[YRI][hapmap]
rs2414945	0.80[CHB][hapmap];0.83[CHD][hapmap]
rs34296414	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34310656	0.80[AMR][1000 genomes]
rs34590589	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34699563	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34796890	0.81[AMR][1000 genomes]
rs35008245	0.80[AMR][1000 genomes]
rs35129260	0.80[AMR][1000 genomes]
rs35151633	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35997299	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3743342	0.84[ASW][hapmap];0.83[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap]
rs3743347	0.84[ASW][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs3825977	1.00[LWK][hapmap];0.86[MKK][hapmap]
rs4133922	0.90[ASN][1000 genomes]
rs4238407	1.00[MKK][hapmap];0.82[YRI][hapmap]
rs4312262	0.82[ASN][1000 genomes]
rs4374116	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4412926	0.81[ASN][1000 genomes]
rs4432221	0.88[MEX][hapmap];0.90[MKK][hapmap]
rs4536412	0.84[ASW][hapmap];0.83[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap]
rs4597266	0.92[ASN][1000 genomes]
rs4776348	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4776350	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4776354	0.81[CHD][hapmap]
rs4776905	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4776906	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4776908	0.84[ASW][hapmap];0.88[MEX][hapmap];1.00[YRI][hapmap]
rs4776909	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4776913	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4776917	0.84[ASW][hapmap];0.92[MEX][hapmap];0.85[MKK][hapmap];0.80[AMR][1000 genomes]
rs4776918	0.80[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4776919	0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4776920	0.80[CHB][hapmap];0.84[CHD][hapmap]
rs4776923	0.84[CHD][hapmap]
rs58074225	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6494639	0.85[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs6494640	0.85[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs67360912	0.90[ASN][1000 genomes]
rs67486165	0.81[AMR][1000 genomes]
rs67872952	0.80[AMR][1000 genomes]
rs71400364	0.83[AFR][1000 genomes]
rs7161879	0.95[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7162340	0.86[ASN][1000 genomes]
rs7162810	0.84[ASN][1000 genomes]
rs7163460	0.85[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7176337	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7176940	0.85[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs7177772	0.85[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7178975	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7181556	0.83[MEX][hapmap]
rs7183186	0.85[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs72625777	0.80[AFR][1000 genomes]
rs72625778	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8025186	0.85[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs8025414	0.91[ASN][1000 genomes]
rs8025621	0.80[AMR][1000 genomes]
rs8025774	0.84[ASW][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.95[MKK][hapmap]
rs8028934	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs8029582	0.84[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs8029963	0.85[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs8030142	0.85[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs8031440	0.84[ASW][hapmap];0.83[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap]
rs8031500	0.88[MEX][hapmap]
rs8031586	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs8031627	0.84[ASW][hapmap];0.87[MEX][hapmap];0.95[MKK][hapmap]
rs8032438	0.80[CHB][hapmap];0.84[CHD][hapmap]
rs8034421	0.89[CHB][hapmap]
rs8035235	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs8038044	0.93[ASN][1000 genomes]
rs8038166	0.80[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs8038652	0.88[MEX][hapmap]
rs8042007	0.84[ASW][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs8042237	0.88[MEX][hapmap]
rs8042340	0.85[CHB][hapmap];0.93[ASN][1000 genomes]
rs877177	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8991	0.80[CHB][hapmap];0.84[CHD][hapmap]
rs971868	0.80[CHB][hapmap]
rs975944	0.87[ASN][1000 genomes]
rs975946	0.80[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs9806377	0.84[ASW][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.80[AMR][1000 genomes]
rs9806386	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9806590	0.84[ASW][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9920845	0.91[ASN][1000 genomes]
rs9920957	0.80[CHB][hapmap];0.84[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
AAGAB	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
IQCH	SCAN
MAP2K5	SCAN
DENND4A	SCAN
ANP32A	SCAN