SNP Report
Basic Infomation
| Name | rs3825977 dbSNP |
|---|---|
| Location | chr:15,67481248 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 78)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10152595 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10152973 | 0.82[ASW][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap] |
| rs10438355 | 0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10518716 | 0.82[ASW][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.80[ASN][1000 genomes] |
| rs12148121 | 0.81[ASN][1000 genomes] |
| rs12148134 | 0.81[AMR][1000 genomes] |
| rs12324222 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs12443279 | 0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes] |
| rs12443472 | 0.81[GIH][hapmap];0.87[MEX][hapmap] |
| rs12476 | 0.82[ASW][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.86[ASN][1000 genomes] |
| rs12592400 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes] |
| rs12594065 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs12594229 | 0.86[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs12594234 | 0.80[AMR][1000 genomes] |
| rs12595334 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12595736 | 0.82[CHB][hapmap];0.86[JPT][hapmap] |
| rs12898685 | 0.81[AMR][1000 genomes] |
| rs12899051 | 0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes] |
| rs12899067 | 0.81[AMR][1000 genomes] |
| rs12900708 | 0.85[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes] |
| rs12901312 | 0.80[AMR][1000 genomes] |
| rs12901789 | 0.80[AMR][1000 genomes] |
| rs12910062 | 0.82[CHB][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs12910196 | 0.81[AMR][1000 genomes] |
| rs12911370 | 0.82[ASW][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap] |
| rs12916403 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs12917612 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1444936 | 0.82[ASW][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap] |
| rs16950776 | 0.81[ASN][1000 genomes] |
| rs16950804 | 0.82[ASW][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];0.81[AMR][1000 genomes] |
| rs16950805 | 0.81[AMR][1000 genomes] |
| rs16953610 | 0.82[ASN][1000 genomes] |
| rs17526859 | 0.82[ASW][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap] |
| rs2278670 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2289262 | 0.82[ASW][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.81[ASN][1000 genomes] |
| rs2289789 | 0.80[JPT][hapmap] |
| rs2289790 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2289791 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34296414 | 0.81[AMR][1000 genomes] |
| rs34590589 | 0.81[AMR][1000 genomes] |
| rs34699563 | 0.81[AMR][1000 genomes] |
| rs34796890 | 0.81[AMR][1000 genomes] |
| rs35129260 | 0.80[AMR][1000 genomes] |
| rs35151633 | 0.80[AMR][1000 genomes] |
| rs35997299 | 0.81[ASN][1000 genomes] |
| rs3743342 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3743347 | 0.82[ASW][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap] |
| rs4238407 | 0.82[CHB][hapmap];0.87[MKK][hapmap] |
| rs4432221 | 0.82[CHB][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap] |
| rs4536412 | 0.82[ASW][hapmap];0.81[GIH][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap] |
| rs4776348 | 0.80[AMR][1000 genomes] |
| rs4776350 | 0.81[AMR][1000 genomes] |
| rs4776905 | 0.82[CHB][hapmap];0.86[JPT][hapmap] |
| rs4776906 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes] |
| rs4776908 | 0.82[ASW][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap] |
| rs4776909 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes] |
| rs4776917 | 0.82[ASW][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap] |
| rs58074225 | 0.81[AMR][1000 genomes] |
| rs67486165 | 0.81[ASN][1000 genomes] |
| rs67872952 | 0.80[AMR][1000 genomes] |
| rs7166081 | 0.81[GIH][hapmap] |
| rs7173826 | 1.00[LWK][hapmap];0.86[MKK][hapmap] |
| rs7178824 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7181543 | 0.82[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7181556 | 0.86[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7181877 | 0.82[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72625778 | 0.80[AMR][1000 genomes] |
| rs8025621 | 0.80[AMR][1000 genomes] |
| rs8025774 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.91[MKK][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8031440 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8031500 | 0.81[GIH][hapmap];0.87[MEX][hapmap] |
| rs8031627 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8038652 | 0.81[GIH][hapmap];0.87[MEX][hapmap] |
| rs8042007 | 0.82[ASW][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap] |
| rs8042237 | 0.81[GIH][hapmap];0.87[MEX][hapmap] |
| rs877177 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs9806377 | 0.82[ASW][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap] |
| rs9806590 | 0.82[ASW][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259347 | Distal transcriptional regulation |
| SMAD3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014