SNP Report
Basic Infomation
| Name | rs7163120 dbSNP |
|---|---|
| Location | chr:15,91260945 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12438468 | 0.86[CHB][hapmap] |
| rs12442488 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2301604 | 1.00[ASN][1000 genomes] |
| rs60434753 | 0.94[ASN][1000 genomes] |
| rs6496720 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7163132 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7170454 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7183308 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8032275 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs8033093 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs8037560 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259736 | Proximal transcriptional regulation |
| ENSG00000183291 | Distal transcriptional regulation |
| ENSG00000254678 | Distal transcriptional regulation |
| PAFAH1B2 | Distal transcriptional regulation |
| ALDOA | Distal transcriptional regulation |
| CSRNP1 | Distal transcriptional regulation |
| TRMT10C | Distal transcriptional regulation |
| HNRNPA2B1 | Distal transcriptional regulation |
| ASH2L | Distal transcriptional regulation |
| SAT1 | Distal transcriptional regulation |
| MTMR10 | Distal transcriptional regulation |
| SQRDL | Distal transcriptional regulation |
| VWA9 | Distal transcriptional regulation |
| SLC24A1 | Distal transcriptional regulation |
| CRTC3 | Distal transcriptional regulation |
| UNC45A | Distal transcriptional regulation |
| HDDC3 | Distal transcriptional regulation |
| FES | Distal transcriptional regulation |
| ENSG00000245479 | Distal transcriptional regulation |
| FURIN | Distal transcriptional regulation |
| ENSG00000224441 | Distal transcriptional regulation |
| MAN2A2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014