SNP Report
Basic Infomation
| Name | rs71424154 dbSNP |
|---|---|
| Location | chr:2,65291591 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 57)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10194628 | 1.00[ASN][1000 genomes] |
| rs11887168 | 1.00[ASN][1000 genomes] |
| rs11887325 | 1.00[ASN][1000 genomes] |
| rs12713530 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12997435 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12998056 | 0.96[EUR][1000 genomes] |
| rs13001292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13012226 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13022459 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13027430 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13033002 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13034506 | 0.96[EUR][1000 genomes] |
| rs268854 | 1.00[ASN][1000 genomes] |
| rs268856 | 1.00[ASN][1000 genomes] |
| rs268872 | 1.00[ASN][1000 genomes] |
| rs34004866 | 1.00[ASN][1000 genomes] |
| rs34012288 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34092394 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34113653 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34134287 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34269329 | 1.00[ASN][1000 genomes] |
| rs34291961 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34486588 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34657195 | 1.00[ASN][1000 genomes] |
| rs34667950 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34767439 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34840820 | 1.00[ASN][1000 genomes] |
| rs34842788 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34849808 | 1.00[ASN][1000 genomes] |
| rs34866486 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34876673 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34909104 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34961685 | 1.00[ASN][1000 genomes] |
| rs35001546 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35291688 | 1.00[ASN][1000 genomes] |
| rs35295972 | 1.00[ASN][1000 genomes] |
| rs35389602 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35481759 | 1.00[ASN][1000 genomes] |
| rs35503765 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35525037 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35578846 | 1.00[ASN][1000 genomes] |
| rs35638142 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35706442 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35925158 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36072792 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55849982 | 1.00[ASN][1000 genomes] |
| rs6752302 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6756260 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71424152 | 0.96[EUR][1000 genomes] |
| rs71424156 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71424157 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71424158 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71424159 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71424160 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71424163 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7564461 | 1.00[ASN][1000 genomes] |
| rs7604049 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAB1A | Distal transcriptional regulation |
| CEP68 | Distal transcriptional regulation |
| CEP68 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014