SNP Report
Basic Infomation
| Name | rs12998056 dbSNP |
|---|---|
| Location | chr:2,65286006 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10173227 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs10176281 | 0.81[AFR][1000 genomes] |
| rs11890772 | 0.83[AMR][1000 genomes] |
| rs12713530 | 0.87[EUR][1000 genomes] |
| rs12997435 | 0.87[EUR][1000 genomes] |
| rs13001292 | 0.87[EUR][1000 genomes] |
| rs13012226 | 0.87[EUR][1000 genomes] |
| rs13022459 | 0.96[EUR][1000 genomes] |
| rs13027430 | 0.87[EUR][1000 genomes] |
| rs13033002 | 0.91[EUR][1000 genomes] |
| rs13034506 | 1.00[EUR][1000 genomes] |
| rs13389745 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs13400482 | 0.83[AMR][1000 genomes] |
| rs28377817 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs34012288 | 0.87[EUR][1000 genomes] |
| rs34092394 | 0.87[EUR][1000 genomes] |
| rs34113653 | 0.96[EUR][1000 genomes] |
| rs34134287 | 0.87[EUR][1000 genomes] |
| rs34291961 | 0.96[EUR][1000 genomes] |
| rs34486588 | 0.87[EUR][1000 genomes] |
| rs34667950 | 0.87[EUR][1000 genomes] |
| rs34842788 | 0.87[EUR][1000 genomes] |
| rs34866486 | 0.87[EUR][1000 genomes] |
| rs34876673 | 0.96[EUR][1000 genomes] |
| rs34909104 | 1.00[EUR][1000 genomes] |
| rs35001546 | 0.87[EUR][1000 genomes] |
| rs35389602 | 0.96[EUR][1000 genomes] |
| rs35503765 | 0.87[EUR][1000 genomes] |
| rs35525037 | 0.87[EUR][1000 genomes] |
| rs35638142 | 0.87[EUR][1000 genomes] |
| rs35706442 | 0.96[EUR][1000 genomes] |
| rs36072792 | 0.83[EUR][1000 genomes] |
| rs56367631 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs57171913 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6752302 | 0.87[EUR][1000 genomes] |
| rs6756260 | 0.87[EUR][1000 genomes] |
| rs71424152 | 1.00[EUR][1000 genomes] |
| rs71424154 | 0.96[EUR][1000 genomes] |
| rs71424156 | 0.82[EUR][1000 genomes] |
| rs71424157 | 0.87[EUR][1000 genomes] |
| rs71424158 | 0.87[EUR][1000 genomes] |
| rs71424159 | 0.87[EUR][1000 genomes] |
| rs71424160 | 0.87[EUR][1000 genomes] |
| rs71424163 | 0.87[EUR][1000 genomes] |
| rs7604049 | 0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000252892 | Distal transcriptional regulation |
| ACTR2 | Distal transcriptional regulation |
| CEP68 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014