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rVarBase
SNP Report
Basic Infomation
Name
rs6938256  
dbSNP
Location
chr:6,20887954
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10946416
0.82[CEU][hapmap]
rs4546483
0.82[CEU][hapmap]
rs4612156
0.82[CEU][hapmap]
rs6913323
0.82[CEU][hapmap]
rs9350276
0.94[CHB][hapmap];0.87[JPT][hapmap]
rs9350294
0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap]
rs9688952
0.94[CHB][hapmap];0.91[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
MC1R
SCAN