SNP Report
Basic Infomation
| Name | rs6900509 dbSNP |
|---|---|
| Location | chr:6,20823848 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs16884302 | 0.83[EUR][1000 genomes] |
| rs16901574 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4076137 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41272363 | 0.88[EUR][1000 genomes] |
| rs55805653 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57385568 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58646447 | 1.00[ASN][1000 genomes] |
| rs60342931 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62398109 | 0.86[EUR][1000 genomes] |
| rs6931788 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72832363 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73379337 | 1.00[ASN][1000 genomes] |
| rs73379338 | 1.00[ASN][1000 genomes] |
| rs73379345 | 1.00[ASN][1000 genomes] |
| rs73733101 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7758467 | 0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014