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rVarBase
SNP Report
Basic Infomation
Name
rs58646447
dbSNP
Location
chr:6,20732822
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs16901574
1.00[ASN][1000 genomes]
rs4076137
1.00[ASN][1000 genomes]
rs55805653
1.00[ASN][1000 genomes]
rs57385568
1.00[ASN][1000 genomes]
rs60342931
1.00[ASN][1000 genomes]
rs6900509
1.00[ASN][1000 genomes]
rs6931788
1.00[ASN][1000 genomes]
rs72832363
1.00[ASN][1000 genomes]
rs73379337
0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73379338
0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73379345
0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73733101
1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)