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rVarBase
SNP Report
Basic Infomation
Name
rs62398109  
dbSNP
Location
chr:6,20881816
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11961135
1.00[ASN][1000 genomes]
rs11970030
0.84[EUR][1000 genomes]
rs16884302
0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41272363
0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4307160
0.80[EUR][1000 genomes]
rs57385568
0.83[EUR][1000 genomes]
rs60342931
0.88[EUR][1000 genomes]
rs62405341
1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6900509
0.86[EUR][1000 genomes]
rs6931788
0.86[EUR][1000 genomes]
rs72832363
0.86[EUR][1000 genomes]
rs73733101
0.85[EUR][1000 genomes]
rs7758467
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)