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rVarBase
SNP Report
Basic Infomation
Name
rs4307160  
dbSNP
Location
chr:6,20942196
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11961135
0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11966306
0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11970030
0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16884302
0.81[EUR][1000 genomes]
rs62398109
0.80[EUR][1000 genomes]
rs62405340
0.81[EUR][1000 genomes]
rs62405341
0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62405352
0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6940952
0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7758467
0.82[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)