SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 16)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12293826	0.81[YRI][hapmap];0.89[AMR][1000 genomes]
rs2904963	0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs601047	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs601805	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606412	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61740228	0.89[AMR][1000 genomes]
rs619328	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs630585	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs631018	0.81[AFR][1000 genomes]
rs632555	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs635603	0.88[AFR][1000 genomes]
rs677805	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs679950	0.89[AMR][1000 genomes]
rs7113740	0.89[AMR][1000 genomes]
rs7925178	0.80[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
PPP2R5B	Proximal transcriptional regulation
EHD1	Distal transcriptional regulation
TM7SF2	Distal transcriptional regulation
GPHA2	Distal transcriptional regulation
C11orf85	Distal transcriptional regulation
ATG2A	Distal transcriptional regulation
PPP2R5B	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)