SNP Report
Basic Infomation
| Name | rs606974 dbSNP |
|---|---|
| Location | chr:11,64694502 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12293826 | 0.89[AMR][1000 genomes] |
| rs2904963 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs601047 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs601805 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs606412 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61740228 | 0.89[AMR][1000 genomes] |
| rs619328 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs630585 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs631018 | 0.81[AFR][1000 genomes] |
| rs632555 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs635603 | 0.88[AFR][1000 genomes] |
| rs677805 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs679950 | 0.89[AMR][1000 genomes] |
| rs684250 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7113740 | 0.89[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP2R5B | Proximal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| GPHA2 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| BATF2 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| PPP2R5B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014