SNP Report
Basic Infomation
| Name | rs6759588 dbSNP |
|---|---|
| Location | chr:2,103040159 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10515921 | 0.86[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs11465584 | 1.00[ASN][1000 genomes] |
| rs11465596 | 0.92[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs11465670 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs11465698 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11891827 | 1.00[ASN][1000 genomes] |
| rs11902044 | 1.00[ASN][1000 genomes] |
| rs13405222 | 1.00[ASN][1000 genomes] |
| rs1403549 | 0.92[CEU][hapmap] |
| rs17027327 | 0.92[CEU][hapmap] |
| rs17027341 | 0.92[CEU][hapmap] |
| rs17027421 | 0.92[CEU][hapmap] |
| rs17639215 | 1.00[ASN][1000 genomes] |
| rs1813298 | 1.00[ASN][1000 genomes] |
| rs1813299 | 1.00[ASN][1000 genomes] |
| rs1880000 | 0.92[CEU][hapmap] |
| rs3752659 | 0.92[EUR][1000 genomes] |
| rs3771167 | 0.85[CEU][hapmap] |
| rs57942521 | 1.00[ASN][1000 genomes] |
| rs6728945 | 0.84[CEU][hapmap] |
| rs6749440 | 0.92[CEU][hapmap] |
| rs7570821 | 1.00[AFR][1000 genomes] |
| rs7575867 | 0.92[CEU][hapmap] |
| rs7583683 | 0.92[CEU][hapmap] |
| rs7587856 | 0.92[CEU][hapmap] |
| rs7593444 | 0.92[CEU][hapmap] |
| rs7600961 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs7601773 | 0.92[CEU][hapmap] |
| rs9677607 | 0.92[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL18RAP | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014