SNP Report
Basic Infomation
| Name | rs6719130 dbSNP |
|---|---|
| Location | chr:2,102958236 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10515921 | 0.94[CEU][hapmap];1.00[YRI][hapmap] |
| rs11465586 | 1.00[ASN][1000 genomes] |
| rs11465596 | 0.87[CEU][hapmap] |
| rs11465670 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs11465698 | 1.00[JPT][hapmap] |
| rs11891827 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17027173 | 1.00[JPT][hapmap] |
| rs17639215 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1813298 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1813299 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34210856 | 0.95[ASN][1000 genomes] |
| rs34225180 | 0.95[ASN][1000 genomes] |
| rs3771167 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs6543135 | 1.00[JPT][hapmap] |
| rs6728945 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs7558013 | 1.00[JPT][hapmap] |
| rs7600961 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs985523 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1RL1 | Distal transcriptional regulation |
| IL1RL1 | RNA binding protein mediated regulation |
| IL18R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014