SNP Report
Basic Infomation
| Name | rs34210856 dbSNP |
|---|---|
| Location | chr:2,102955474 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11465586 | 0.95[ASN][1000 genomes] |
| rs34082000 | 1.00[AMR][1000 genomes] |
| rs34225180 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34835752 | 1.00[AMR][1000 genomes] |
| rs34889382 | 1.00[AMR][1000 genomes] |
| rs34963717 | 1.00[AMR][1000 genomes] |
| rs35024045 | 1.00[AMR][1000 genomes] |
| rs35039261 | 1.00[AMR][1000 genomes] |
| rs35204972 | 1.00[AMR][1000 genomes] |
| rs35276037 | 1.00[AMR][1000 genomes] |
| rs35327589 | 1.00[AMR][1000 genomes] |
| rs35567979 | 1.00[AMR][1000 genomes] |
| rs3771167 | 0.95[ASN][1000 genomes] |
| rs55689230 | 1.00[AMR][1000 genomes] |
| rs56081302 | 1.00[AMR][1000 genomes] |
| rs6719130 | 0.95[ASN][1000 genomes] |
| rs6728945 | 0.86[ASN][1000 genomes] |
| rs985523 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1RL1 | Proximal transcriptional regulation |
| IL1RL1 | RNA binding protein mediated regulation |
| IL18R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014