SNP Report
Basic Infomation
| Name | rs6673172 dbSNP |
|---|---|
| Location | chr:1,155530012 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10158433 | 1.00[MEX][hapmap] |
| rs10158907 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13373934 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13375289 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13375379 | 1.00[MEX][hapmap] |
| rs13376498 | 1.00[MKK][hapmap] |
| rs16836851 | 1.00[MEX][hapmap] |
| rs28491466 | 1.00[MEX][hapmap] |
| rs28516425 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28850118 | 1.00[AMR][1000 genomes] |
| rs35777901 | 1.00[ASW][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap] |
| rs57665266 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58932176 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59249132 | 1.00[AMR][1000 genomes] |
| rs59445713 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60137217 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61103093 | 1.00[AMR][1000 genomes] |
| rs61425508 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6664370 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6665660 | 1.00[MEX][hapmap] |
| rs7519697 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7548199 | 1.00[MKK][hapmap] |
| rs959485 | 1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASH1L-AS1 | Proximal transcriptional regulation |
| ASH1L | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014