SNP Report
Basic Infomation
| Name | rs6664370 dbSNP |
|---|---|
| Location | chr:1,155486135 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10158907 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13373934 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13375289 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28516425 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28850118 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35777901 | 1.00[YRI][hapmap] |
| rs57665266 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58932176 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59249132 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59445713 | 1.00[AMR][1000 genomes] |
| rs60137217 | 1.00[AMR][1000 genomes] |
| rs61103093 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61425508 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6673172 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7519697 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7549232 | 0.82[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASH1L | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014