SNP Report
Basic Infomation
| Name | rs6671774 dbSNP |
|---|---|
| Location | chr:1,201134414 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1404401 | 0.81[ASN][1000 genomes] |
| rs1408870 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16847900 | 1.00[AMR][1000 genomes] |
| rs16847944 | 0.81[ASN][1000 genomes] |
| rs16847977 | 0.80[AFR][1000 genomes] |
| rs55643427 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs56799079 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61819514 | 0.81[ASN][1000 genomes] |
| rs61819516 | 0.82[AFR][1000 genomes] |
| rs6666862 | 0.81[ASN][1000 genomes] |
| rs74136323 | 1.00[AMR][1000 genomes] |
| rs74136339 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs74136341 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs74136342 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM9 | Distal transcriptional regulation |
| TMEM9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014