SNP Report
Basic Infomation
| Name | rs1408870 dbSNP |
|---|---|
| Location | chr:1,201138247 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1404401 | 0.98[ASN][1000 genomes] |
| rs16847900 | 1.00[AMR][1000 genomes] |
| rs16847944 | 0.98[ASN][1000 genomes] |
| rs16847960 | 0.93[ASN][1000 genomes] |
| rs16847970 | 0.91[ASN][1000 genomes] |
| rs16847977 | 0.83[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs16847981 | 0.89[ASN][1000 genomes] |
| rs55643427 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56799079 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs60914997 | 0.91[ASN][1000 genomes] |
| rs61819514 | 0.98[ASN][1000 genomes] |
| rs61819516 | 0.84[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6666862 | 0.98[ASN][1000 genomes] |
| rs6671774 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74136323 | 1.00[AMR][1000 genomes] |
| rs74136339 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs74136341 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs74136342 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM9 | Distal transcriptional regulation |
| IGFN1 | Distal transcriptional regulation |
| TMEM9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014