SNP Report
Basic Infomation
| Name | rs6670530 dbSNP |
|---|---|
| Location | chr:1,155320278 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10158037 | 0.81[AFR][1000 genomes] |
| rs10158433 | 0.85[LWK][hapmap] |
| rs13375379 | 0.97[LWK][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs16836851 | 0.88[ASW][hapmap];0.91[LWK][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs16836867 | 0.86[YRI][hapmap] |
| rs16836868 | 0.88[LWK][hapmap];0.91[YRI][hapmap] |
| rs28438500 | 0.86[AFR][1000 genomes] |
| rs28491466 | 0.88[LWK][hapmap];0.86[YRI][hapmap] |
| rs55641549 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56035547 | 0.80[AFR][1000 genomes] |
| rs56770523 | 0.85[AFR][1000 genomes] |
| rs57134822 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57519519 | 0.80[AFR][1000 genomes] |
| rs57807227 | 0.82[AFR][1000 genomes] |
| rs57862851 | 1.00[AMR][1000 genomes] |
| rs58471239 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58621120 | 0.80[AFR][1000 genomes] |
| rs58647953 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58850753 | 0.85[AFR][1000 genomes] |
| rs59633238 | 0.80[AFR][1000 genomes] |
| rs59992966 | 0.80[AFR][1000 genomes] |
| rs60818259 | 0.80[AFR][1000 genomes] |
| rs61403978 | 0.80[AFR][1000 genomes] |
| rs6659913 | 0.95[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs6665660 | 0.88[LWK][hapmap];0.86[YRI][hapmap] |
| rs6671191 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72993428 | 0.80[AFR][1000 genomes] |
| rs72993486 | 0.81[AFR][1000 genomes] |
| rs73008931 | 0.86[AFR][1000 genomes] |
| rs73008968 | 0.80[AFR][1000 genomes] |
| rs73008999 | 0.85[AFR][1000 genomes] |
| rs73010906 | 0.80[AFR][1000 genomes] |
| rs73010909 | 0.80[AFR][1000 genomes] |
| rs73010921 | 0.82[AFR][1000 genomes] |
| rs7517139 | 0.85[AFR][1000 genomes] |
| rs7517777 | 0.82[AFR][1000 genomes] |
| rs7523189 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASH1L | Proximal transcriptional regulation |
| MIR555 | Proximal transcriptional regulation |
| ASH1L | Distal transcriptional regulation |
| MIR555 | Distal transcriptional regulation |
| ASH1L | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014