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rVarBase
SNP Report
Basic Infomation
Name
rs58471239  
dbSNP
Location
chr:1,155311136
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs55641549
0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57134822
0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57862851
1.00[AMR][1000 genomes]
rs58647953
0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59992966
0.81[AFR][1000 genomes]
rs6670530
0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671191
0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523189
0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ASH1L
Distal transcriptional regulation
MIR555
Distal transcriptional regulation
RUSC1
Distal transcriptional regulation
RUSC1-AS1
Distal transcriptional regulation
ASH1L
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)