SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 17)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1039823	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.84[EUR][1000 genomes]
rs11127150	0.85[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs12473028	0.88[CHB][hapmap]
rs12624279	0.96[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1509396	0.82[CHB][hapmap]
rs2048240	0.85[CEU][hapmap]
rs2279990	0.84[CEU][hapmap]
rs4426489	0.80[CEU][hapmap]
rs4617998	0.88[CHB][hapmap]
rs4666068	0.82[CEU][hapmap];0.88[CHB][hapmap];0.80[EUR][1000 genomes]
rs4666070	0.88[CHB][hapmap]
rs6547851	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7562	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7606480	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs906805	0.81[CEU][hapmap]
rs925255	0.82[CHB][hapmap]
rs9309662	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
FOSL2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 3)