SNP Report
Name | rs925255   dbSNP |
---|---|
Location | chr:2,28614794 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10199829 | 0.96[CEU][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes] |
rs1039823 | 0.89[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes] |
rs11127150 | 0.92[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes] |
rs11677002 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12473028 | 0.94[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes] |
rs12624279 | 0.82[CEU][hapmap] |
rs1509396 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4426489 | 0.81[CEU][hapmap] |
rs4617998 | 0.89[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4666068 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4666070 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6547850 | 0.82[CHB][hapmap] |
rs6547851 | 0.82[CHB][hapmap] |
rs7562 | 0.81[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap] |
rs7606480 | 0.82[CEU][hapmap];0.82[CHB][hapmap] |
rs906805 | 0.89[CEU][hapmap];0.81[JPT][hapmap];0.83[TSI][hapmap] |
rs9309662 | 0.82[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap] |
Symbol | Regulation type |
---|---|
FOSL2 | Proximal transcriptional regulation |
RPL28 | Distal transcriptional regulation |
PLB1 | Distal transcriptional regulation |
BRE | Distal transcriptional regulation |
RBKS | Distal transcriptional regulation |
ENSG00000227938 | Distal transcriptional regulation |
PPP1CB | Distal transcriptional regulation |
RNU1-5 | Distal transcriptional regulation |
UBE2I | Distal transcriptional regulation |
MIR21 | Distal transcriptional regulation |
NCOA2 | Distal transcriptional regulation |
SLC4A1AP | Distal transcriptional regulation |
SUPT7L | Distal transcriptional regulation |
MRPL33 | Distal transcriptional regulation |
ENSG00000225991 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014