SNP Report
Basic Infomation
| Name | rs925255 dbSNP |
|---|---|
| Location | chr:2,28614794 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10199829 | 0.96[CEU][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs1039823 | 0.89[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11127150 | 0.92[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes] |
| rs11677002 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12473028 | 0.94[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs12624279 | 0.82[CEU][hapmap] |
| rs1509396 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4426489 | 0.81[CEU][hapmap] |
| rs4617998 | 0.89[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs4666068 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4666070 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6547850 | 0.82[CHB][hapmap] |
| rs6547851 | 0.82[CHB][hapmap] |
| rs7562 | 0.81[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap] |
| rs7606480 | 0.82[CEU][hapmap];0.82[CHB][hapmap] |
| rs906805 | 0.89[CEU][hapmap];0.81[JPT][hapmap];0.83[TSI][hapmap] |
| rs9309662 | 0.82[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FOSL2 | Proximal transcriptional regulation |
| RPL28 | Distal transcriptional regulation |
| PLB1 | Distal transcriptional regulation |
| BRE | Distal transcriptional regulation |
| RBKS | Distal transcriptional regulation |
| ENSG00000227938 | Distal transcriptional regulation |
| PPP1CB | Distal transcriptional regulation |
| RNU1-5 | Distal transcriptional regulation |
| UBE2I | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| NCOA2 | Distal transcriptional regulation |
| SLC4A1AP | Distal transcriptional regulation |
| SUPT7L | Distal transcriptional regulation |
| MRPL33 | Distal transcriptional regulation |
| ENSG00000225991 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014