SNP Report
Basic Infomation
| Name | rs653343 dbSNP |
|---|---|
| Location | chr:11,64606177 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12365548 | 0.82[JPT][hapmap] |
| rs12365878 | 0.82[JPT][hapmap] |
| rs12790925 | 0.82[JPT][hapmap] |
| rs12798965 | 0.82[JPT][hapmap] |
| rs1940568 | 0.92[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs2957160 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3825015 | 0.82[JPT][hapmap] |
| rs4930682 | 0.86[JPT][hapmap] |
| rs544822 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs589984 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs647145 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs670358 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs684821 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs916606 | 0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDC42BPG | Proximal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| MEN1 | Distal transcriptional regulation |
| CDC42BPG | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014