SNP Report
Basic Infomation
| Name | rs647145 dbSNP |
|---|---|
| Location | chr:11,64594393 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231886 | 0.82[CHD][hapmap] |
| rs12365548 | 0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs12365873 | 0.80[ASN][1000 genomes] |
| rs12365878 | 0.82[JPT][hapmap] |
| rs12790925 | 0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12798965 | 0.82[JPT][hapmap] |
| rs2957160 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3825015 | 0.82[JPT][hapmap] |
| rs4930277 | 0.80[ASN][1000 genomes] |
| rs4930682 | 0.86[JPT][hapmap] |
| rs494252 | 0.84[GIH][hapmap] |
| rs544822 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs589984 | 0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs653343 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs670358 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs684821 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7936466 | 0.80[ASN][1000 genomes] |
| rs916606 | 0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SF1 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| CDC42BPG | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014