SNP Report
Basic Infomation
| Name | rs544822 dbSNP |
|---|---|
| Location | chr:11,64615450 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12365548 | 0.81[JPT][hapmap] |
| rs12365878 | 0.82[JPT][hapmap] |
| rs12790925 | 0.82[JPT][hapmap] |
| rs12798965 | 0.82[JPT][hapmap] |
| rs2957160 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3825015 | 0.82[JPT][hapmap] |
| rs4930682 | 0.86[JPT][hapmap] |
| rs494252 | 0.84[GIH][hapmap] |
| rs589984 | 0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs647145 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs653343 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs670358 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs684821 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs916606 | 0.82[CHD][hapmap];0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDC42BPG | Proximal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| GPHA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SF1 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014