SNP Report
Basic Infomation
| Name | rs62208018 dbSNP |
|---|---|
| Location | chr:20,31150451 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs55677103 | 1.00[EUR][1000 genomes] |
| rs6119259 | 1.00[EUR][1000 genomes] |
| rs6119261 | 1.00[EUR][1000 genomes] |
| rs6119263 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6119268 | 1.00[EUR][1000 genomes] |
| rs6119882 | 1.00[EUR][1000 genomes] |
| rs6119892 | 1.00[EUR][1000 genomes] |
| rs6119898 | 1.00[EUR][1000 genomes] |
| rs6119906 | 1.00[EUR][1000 genomes] |
| rs61433383 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62208014 | 0.89[EUR][1000 genomes] |
| rs62208017 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62208046 | 1.00[EUR][1000 genomes] |
| rs62208047 | 1.00[EUR][1000 genomes] |
| rs62208048 | 1.00[EUR][1000 genomes] |
| rs6579025 | 1.00[EUR][1000 genomes] |
| rs7266448 | 1.00[EUR][1000 genomes] |
| rs8119624 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000233293 | Distal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
| ENSG00000233293 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014