SNP Report
Basic Infomation
| Name | rs61433383 dbSNP |
|---|---|
| Location | chr:20,31145595 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs55677103 | 0.89[EUR][1000 genomes] |
| rs6119259 | 0.89[EUR][1000 genomes] |
| rs6119261 | 0.89[EUR][1000 genomes] |
| rs6119263 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6119268 | 0.89[EUR][1000 genomes] |
| rs6119882 | 0.89[EUR][1000 genomes] |
| rs6119892 | 0.89[EUR][1000 genomes] |
| rs6119898 | 0.89[EUR][1000 genomes] |
| rs6119906 | 0.89[EUR][1000 genomes] |
| rs62208017 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62208018 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62208046 | 0.89[EUR][1000 genomes] |
| rs62208047 | 0.89[EUR][1000 genomes] |
| rs62208048 | 0.89[EUR][1000 genomes] |
| rs6579025 | 0.89[EUR][1000 genomes] |
| rs7266448 | 0.89[EUR][1000 genomes] |
| rs8119624 | 0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000233293 | Proximal transcriptional regulation |
| C20orf112 | Distal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014