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rVarBase
SNP Report
Basic Infomation
Name
rs620690  
dbSNP
Location
chr:11,64153558
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10897489
0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12286894
0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs621941
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6591843
0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
BAD
Distal transcriptional regulation
RPS6KA4
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)