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rVarBase
SNP Report
Basic Infomation
Name
rs10897489  
dbSNP
Location
chr:11,64143077
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11231769
0.83[AFR][1000 genomes]
rs12286894
0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs620690
0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs621941
0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6591843
0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CCDC88B
Distal transcriptional regulation
RPS6KA4
Distal transcriptional regulation
MIR1237
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)