SNP Report
Basic Infomation
| Name | rs6119761 dbSNP |
|---|---|
| Location | chr:20,30665636 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11906975 | 1.00[ASN][1000 genomes] |
| rs17093823 | 1.00[ASN][1000 genomes] |
| rs2295037 | 0.97[ASN][1000 genomes] |
| rs2297304 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2297305 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911544 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs59705005 | 0.81[ASN][1000 genomes] |
| rs60000242 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6087816 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6087828 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6089158 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6089164 | 0.86[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6089177 | 1.00[ASN][1000 genomes] |
| rs6089184 | 0.81[ASN][1000 genomes] |
| rs6089195 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap] |
| rs6089197 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs6121330 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6121331 | 0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6121335 | 1.00[ASN][1000 genomes] |
| rs6121351 | 0.81[ASN][1000 genomes] |
| rs6121360 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap] |
| rs6121361 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6121362 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap] |
| rs6121363 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6121376 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap] |
| rs7354349 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs910186 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HCK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014