SNP Report
Basic Infomation
| Name | rs6089164 dbSNP |
|---|---|
| Location | chr:20,30657619 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2297305 | 0.92[EUR][1000 genomes] |
| rs242602 | 0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs3746602 | 0.95[ASN][1000 genomes] |
| rs3787367 | 0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs60000242 | 0.92[EUR][1000 genomes] |
| rs6089158 | 0.86[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes] |
| rs6089159 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6089163 | 0.84[EUR][1000 genomes] |
| rs6119761 | 0.86[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs7354349 | 0.86[CEU][hapmap];0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HCK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014