SNP Report
Basic Infomation
| Name | rs6119232 dbSNP |
|---|---|
| Location | chr:20,30870339 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1022685 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11697159 | 1.00[ASN][1000 genomes] |
| rs11907235 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11907716 | 0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1407013 | 0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs14316 | 0.92[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs1546922 | 0.92[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs1737896 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs1923095 | 0.82[EUR][1000 genomes] |
| rs2027030 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424874 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424877 | 0.85[EUR][1000 genomes] |
| rs2424884 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424886 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911090 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911198 | 0.92[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs4911544 | 0.92[CEU][hapmap] |
| rs4911552 | 1.00[ASN][1000 genomes] |
| rs6057540 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058527 | 0.89[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs6058569 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058611 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058656 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058674 | 0.80[EUR][1000 genomes] |
| rs6061182 | 1.00[ASN][1000 genomes] |
| rs6061183 | 1.00[ASN][1000 genomes] |
| rs6061184 | 0.89[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs6061195 | 0.92[CEU][hapmap] |
| rs6061216 | 0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6087884 | 0.81[EUR][1000 genomes] |
| rs6087887 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6121352 | 0.92[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs6141637 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6141640 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6141641 | 0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6142618 | 0.92[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs911129 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000264308 | Proximal transcriptional regulation |
| KIF3B | Distal transcriptional regulation |
| ENSG00000264308 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014