SNP Report
Basic Infomation
| Name | rs2424884 dbSNP |
|---|---|
| Location | chr:20,30984330 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1022685 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11907235 | 1.00[ASN][1000 genomes] |
| rs11907716 | 1.00[ASN][1000 genomes] |
| rs1407013 | 0.96[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs14316 | 1.00[ASN][1000 genomes] |
| rs1546922 | 1.00[ASN][1000 genomes] |
| rs1737896 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2027030 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424874 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424877 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2424886 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911090 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911552 | 1.00[ASN][1000 genomes] |
| rs6057540 | 1.00[ASN][1000 genomes] |
| rs6058569 | 1.00[ASN][1000 genomes] |
| rs6058611 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058656 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058674 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6061184 | 1.00[ASN][1000 genomes] |
| rs6087884 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6087887 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6119232 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6141637 | 1.00[ASN][1000 genomes] |
| rs6141640 | 1.00[ASN][1000 genomes] |
| rs6141641 | 0.96[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs911129 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASXL1 | Distal transcriptional regulation |
| ASXL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014